Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_541

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8908 and 8909 are separated by 429 nucleotides8909 and 8910 are separated by 223 nucleotides mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,279,854 to 1,286,363 8908 mRNA_541: 8909 - HMMPfam-NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)-PF05821, at 1,286,793 to 1,287,579 8909 mRNA_542: 8910 - KOG0118 FOG RRM domain, at 1,287,803 to 1,289,304 8910

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,286,112 - -1.5
1,286,557 - -0.9
1,286,842 - -2.0
1,287,581 - -0.4
1,287,617 - -1.6
1,287,628 - +0.7
1,287,765 - +0.5

Or see this region's nucleotide sequence