Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_553

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8920 and 8921 are separated by 200 nucleotides mRNA_552: 8920 - KOG1761 Signal recognition particle, subunit Srp14, at 1,316,933 to 1,317,920 8920 mRNA_553: 8921 - KOG0907 Thioredoxin, at 1,318,121 to 1,318,450 8921

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,317,791 - 8920 mRNA_552 0.87 +0.1
1,317,802 + 8920 mRNA_552 0.88 +0.7
1,318,088 - +0.4
1,318,114 - -0.3
1,318,806 + +2.1
1,318,953 - -1.7
1,319,097 + -0.9
1,319,101 - +1.0
1,319,103 - -0.2
1,319,104 - -1.0
1,319,104 - +0.0
1,319,122 + -0.2
1,319,151 - +1.3
1,319,153 - -0.9
1,319,180 + +0.6
1,319,263 - +0.1
1,319,280 + +0.2
1,319,311 + +0.8
1,319,334 + +0.2

Or see this region's nucleotide sequence