Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_575

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8942 and 8943 are separated by 337 nucleotides8943 and 8944 are separated by 286 nucleotides mRNA_574: 8942 - K02999 RPA1, POLR1A DNA-directed RNA polymerase I subunit RPA1, at 1,372,563 to 1,378,346 8942 mRNA_575: 8943 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,378,684 to 1,379,466 8943 mRNA_576: 8944 - K20182 VPS33 vacuolar protein sorting-associated protein 33, at 1,379,753 to 1,382,507 8944

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,378,484 + +1.1
1,378,492 + +1.0
1,378,503 + +1.2
1,378,511 + +0.2
1,378,682 + -0.5
1,378,801 - 8943 mRNA_575 0.15 +1.3
1,379,431 + -1.3
1,379,527 + -0.1
1,379,685 - +1.2
1,379,804 - -0.1
1,380,101 + 8944 mRNA_576 0.13 -0.9
1,380,222 - 8944 mRNA_576 0.17 +0.2

Or see this region's nucleotide sequence