Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_579

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8946 and 8947 are separated by 238 nucleotides8947 and 8948 are separated by 201 nucleotides mRNA_578: 8946 - K05687 PARK7 protein DJ-1, at 1,384,762 to 1,386,533 8946 mRNA_579: 8947 - K10686 UBE1C, UBA3 ubiquitin-activating enzyme E1 C, at 1,386,772 to 1,388,532 8947 mRNA_580: 8948 - Hypothetical Protein, at 1,388,734 to 1,389,540 8948

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,386,342 - 8946 mRNA_578 0.89 -0.3
1,386,675 - -2.1
1,388,566 - -0.4
1,388,592 - -0.8
1,388,739 - +0.5
1,388,875 - 8948 mRNA_580 0.17 -0.5
1,388,996 + 8948 mRNA_580 0.32 +1.2
1,389,002 - 8948 mRNA_580 0.33 +0.2
1,389,004 - 8948 mRNA_580 0.33 +0.9
1,389,010 + 8948 mRNA_580 0.34 +0.1
1,389,011 + 8948 mRNA_580 0.34 +0.4
1,389,316 + 8948 mRNA_580 0.72 +0.1
1,389,319 + 8948 mRNA_580 0.72 +0.0
1,389,384 - 8948 mRNA_580 0.81 +0.9
1,389,429 + 8948 mRNA_580 0.86 +1.3
1,389,453 - 8948 mRNA_580 0.89 +1.7
1,389,461 - +1.0

Or see this region's nucleotide sequence