Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_602

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8969 and 8970 are separated by 277 nucleotides8970 and 8971 are separated by 554 nucleotides mRNA_601: 8969 - K01784 galE, GALE UDP-glucose 4-epimerase, at 1,446,011 to 1,447,734 8969 mRNA_602: 8970 - K14642 YND1 golgi apyrase, at 1,448,012 to 1,450,852 8970 mRNA_603: 8971 - Hypothetical Protein, at 1,451,407 to 1,452,135 8971

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,447,803 - +0.7
1,447,902 + +0.3
1,447,914 - +0.5
1,447,984 - -0.6
1,448,065 + +0.9
1,448,175 + -0.2
1,448,628 + 8970 mRNA_602 0.22 +0.8
1,448,634 - 8970 mRNA_602 0.22 -1.2
1,449,066 + 8970 mRNA_602 0.37 +0.8
1,449,942 - 8970 mRNA_602 0.68 +3.3
1,450,391 - 8970 mRNA_602 0.84 +4.7
1,450,530 - 8970 mRNA_602 0.89 +3.3
1,450,725 + +0.6
1,451,009 + -1.0
1,451,145 + +0.3
1,451,151 - +0.8
1,451,270 - +0.3
1,451,283 + +0.4
1,451,283 + +0.6
1,451,548 - 8971 mRNA_603 0.19 -1.7

Or see this region's nucleotide sequence