Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_611

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8978 and 8979 are separated by 70 nucleotides8979 and 8980 are separated by 109 nucleotides mRNA_610: 8978 - K06961 KRR1 ribosomal RNA assembly protein, at 1,469,039 to 1,470,636 8978 mRNA_611: 8979 - K00490 CYP4F cytochrome P450, family 4, subfamily F, at 1,470,707 to 1,472,980 8979 mRNA_612: 8980 - KOG3183 Predicted Zn-finger protein, at 1,473,090 to 1,474,198 8980

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,470,412 - 8978 mRNA_610 0.86 +1.9
1,470,798 - -0.5
1,472,640 + 8979 mRNA_611 0.85 +2.0
1,472,659 - 8979 mRNA_611 0.86 +0.2
1,472,799 - +1.7
1,472,955 - +0.0
1,473,006 + +0.6
1,473,067 - +2.0
1,473,070 + -1.2
1,473,106 - +0.5
1,473,132 + +0.5
1,473,232 - 8980 mRNA_612 0.13 +0.5
1,473,248 - 8980 mRNA_612 0.14 +1.9
1,473,264 + 8980 mRNA_612 0.16 -0.1
1,473,265 + 8980 mRNA_612 0.16 +0.2
1,473,265 + 8980 mRNA_612 0.16 +1.2
1,473,394 - 8980 mRNA_612 0.27 +0.7
1,473,396 + 8980 mRNA_612 0.28 -0.1
1,473,425 - 8980 mRNA_612 0.30 +1.1
1,473,892 - 8980 mRNA_612 0.72 +0.6

Or see this region's nucleotide sequence