Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_615

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8982 and 8983 are separated by 240 nucleotides8983 and 8984 are separated by 490 nucleotides mRNA_614: 8982 - K06875 PDCD5, TFAR19 programmed cell death protein 5, at 1,477,879 to 1,478,544 8982 mRNA_615: 8983 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 1,478,785 to 1,480,102 8983 mRNA_616: 8984 - HMMPfam-Hsp70 protein-PF00012,SUPERFAMILY--SSF100934, at 1,480,593 to 1,481,006 8984

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,477,920 + -0.2
1,478,475 + 8982 mRNA_614 0.89 -0.1
1,478,498 + +0.6
1,478,601 + +0.8
1,478,611 - +2.4
1,478,627 - +1.8
1,478,647 - +0.5
1,478,656 - -0.2
1,478,675 + +0.7
1,478,685 - +0.2
1,478,817 - -0.3
1,478,925 - 8983 mRNA_615 0.11 -2.6
1,478,953 - 8983 mRNA_615 0.13 -0.1
1,478,956 - 8983 mRNA_615 0.13 +0.4
1,479,669 + 8983 mRNA_615 0.67 -0.2
1,480,110 + -0.1
1,480,110 + -2.3
1,480,200 - -0.1

Or see this region's nucleotide sequence