Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_644

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9011 and 9012 are separated by 446 nucleotides9012 and 9013 are separated by 453 nucleotides mRNA_643: 9011 - K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35, at 1,546,203 to 1,548,129 9011 mRNA_644: 9012 - KOG3020 TatD-related DNase, at 1,548,576 to 1,549,928 9012 mRNA_645: 9013 - KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis, at 1,550,382 to 1,551,455 9013

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,547,847 + 9011 mRNA_643 0.85 -1.5
1,547,868 - 9011 mRNA_643 0.86 -0.3
1,547,883 + 9011 mRNA_643 0.87 -2.8
1,547,883 + 9011 mRNA_643 0.87 -1.0
1,548,050 - +1.8
1,548,051 + -0.1
1,548,170 + +0.5
1,548,194 + -1.6
1,548,304 + -0.1
1,548,320 - +0.7
1,548,321 - -1.0
1,548,339 - -0.1
1,548,452 + +0.1
1,548,594 - +0.4
1,548,601 + -0.0
1,548,756 + 9012 mRNA_644 0.13 +0.1
1,548,758 - 9012 mRNA_644 0.13 +0.1
1,548,913 - 9012 mRNA_644 0.25 -0.2
1,549,916 - -0.8
1,549,934 + -0.2
1,549,984 + -1.1

Or see this region's nucleotide sequence