Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_678

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9044 and 9045 are separated by 91 nucleotides9045 and 9046 are separated by 193 nucleotides9046 and 9047 are separated by 473 nucleotides mRNA_676: 9044 - Hypothetical Protein, at 1,626,289 to 1,626,986 9044 mRNA_677: 9045 - Hypothetical Protein, at 1,627,078 to 1,627,551 9045 mRNA_678: 9046 - Hypothetical Protein, at 1,627,745 to 1,628,960 9046 mRNA_679: 9047 - Hypothetical Protein, at 1,629,434 to 1,632,180 9047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,627,037 - -0.0
1,627,450 - 9045 mRNA_677 0.78 -0.2
1,627,738 + +0.3
1,628,490 + 9046 mRNA_678 0.61 +0.4
1,628,624 - 9046 mRNA_678 0.72 -0.1
1,628,647 - 9046 mRNA_678 0.74 +0.7
1,628,668 - 9046 mRNA_678 0.76 +0.5
1,628,682 + 9046 mRNA_678 0.77 -1.6
1,628,807 + 9046 mRNA_678 0.87 -0.0
1,628,811 - 9046 mRNA_678 0.88 +0.2
1,628,994 - +0.1
1,629,418 + -1.9

Or see this region's nucleotide sequence