Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_694

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9060 and 9061 are separated by 220 nucleotides9061 and 9062 are separated by 18 nucleotides9062 and 9063 are separated by 50 nucleotides mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1,655,871 to 1,659,034 9060 mRNA_693: 9061 - Hypothetical Protein, at 1,659,255 to 1,659,647 9061 mRNA_694: 9062 - Hypothetical Protein, at 1,659,666 to 1,660,992 9062 mRNA_695: 9063 - Hypothetical Protein, at 1,661,043 to 1,663,023 9063

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,658,755 - +1.9
1,659,190 + +2.2
1,659,354 - 9061 mRNA_693 0.25 -0.1
1,659,496 - 9061 mRNA_693 0.61 -1.9
1,659,810 + 9062 mRNA_694 0.11 +0.8
1,659,813 - 9062 mRNA_694 0.11 +0.0
1,660,462 - 9062 mRNA_694 0.60 +1.6
1,660,468 + 9062 mRNA_694 0.60 +0.5
1,660,468 + 9062 mRNA_694 0.60 +1.6
1,660,468 + 9062 mRNA_694 0.60 -1.4
1,660,471 + 9062 mRNA_694 0.61 -0.4
1,660,471 - 9062 mRNA_694 0.61 +0.7
1,660,477 + 9062 mRNA_694 0.61 -0.2
1,660,477 + 9062 mRNA_694 0.61 -1.6
1,660,646 - 9062 mRNA_694 0.74 +0.6
1,661,061 - -0.9
1,661,359 + 9063 mRNA_695 0.16 +1.0
1,661,574 + 9063 mRNA_695 0.27 -2.3
1,661,814 - 9063 mRNA_695 0.39 -1.3
1,661,898 + 9063 mRNA_695 0.43 +1.0

Or see this region's nucleotide sequence