Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_747

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9114 and 9115 are separated by 158 nucleotides9115 and 9116 are separated by 948 nucleotides mRNA_746: 9114 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,783,112 to 1,784,758 9114 mRNA_747: 9115 - K02737 PSMB5 20S proteasome subunit beta 5, at 1,784,917 to 1,786,577 9115 mRNA_748: 9116 - Hypothetical Protein, at 1,787,526 to 1,789,386 9116

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,784,346 + 9114 mRNA_746 0.75 -0.6
1,784,582 + 9114 mRNA_746 0.89 -1.1
1,784,944 - +1.9
1,786,697 + -0.9
1,786,700 + +0.9
1,786,700 + +0.0
1,786,709 + +0.9
1,786,881 + -1.6
1,787,445 - +0.1
1,787,566 + -2.0
1,787,569 - -1.7

Or see this region's nucleotide sequence