Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_758

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9125 and 9126 are separated by 52 nucleotides9126 and 9127 are separated by 271 nucleotides mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1,804,262 to 1,807,266 9125 mRNA_758: 9126 - K20404 DEPDC5 DEP domain-containing protein 5, at 1,807,319 to 1,813,069 9126 mRNA_759: 9127 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1,813,341 to 1,815,378 9127

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,806,440 + 9125 mRNA_757 0.72 -0.1
1,806,770 - 9125 mRNA_757 0.83 +0.2
1,807,142 - -2.5
1,807,169 + +0.8
1,807,317 - +0.5
1,807,392 + +0.1
1,808,184 + 9126 mRNA_758 0.15 +0.5
1,808,521 + 9126 mRNA_758 0.21 -0.7
1,808,778 - 9126 mRNA_758 0.25 -2.1
1,808,786 + 9126 mRNA_758 0.26 -0.6
1,809,238 - 9126 mRNA_758 0.33 -1.2
1,809,242 + 9126 mRNA_758 0.33 -0.3
1,809,357 - 9126 mRNA_758 0.35 +1.1
1,809,373 + 9126 mRNA_758 0.36 +0.6
1,809,385 + 9126 mRNA_758 0.36 -0.8
1,809,604 + 9126 mRNA_758 0.40 +0.7
1,809,898 - 9126 mRNA_758 0.45 -0.6
1,810,040 + 9126 mRNA_758 0.47 -1.1
1,810,105 - 9126 mRNA_758 0.48 +2.1
1,810,105 - 9126 mRNA_758 0.48 +3.4
1,810,320 - 9126 mRNA_758 0.52 +0.0
1,810,331 + 9126 mRNA_758 0.52 +0.8
1,810,504 - 9126 mRNA_758 0.55 -0.0
1,810,506 + 9126 mRNA_758 0.55 +0.0
1,810,641 + 9126 mRNA_758 0.58 +0.6
1,810,655 + 9126 mRNA_758 0.58 -1.6
1,811,047 - 9126 mRNA_758 0.65 +0.9
1,811,100 + 9126 mRNA_758 0.66 -1.1
1,811,507 + 9126 mRNA_758 0.73 -0.9
1,811,795 + 9126 mRNA_758 0.78 -0.7
1,811,938 - 9126 mRNA_758 0.80 -0.8
1,812,011 + 9126 mRNA_758 0.82 -0.9
1,812,113 + 9126 mRNA_758 0.83 -1.1
1,812,373 - 9126 mRNA_758 0.88 +1.6
1,812,499 - -2.3
1,812,532 + +1.2
1,812,619 - +0.7
1,812,658 - +0.3
1,812,671 - -0.0
1,812,677 + +0.1
1,812,679 - -0.5
1,812,809 - -0.2
1,812,822 + -0.6
1,812,826 - -0.5
1,812,827 - +0.5
1,812,845 + +0.2
1,812,974 - -0.3
1,812,993 + -1.0
1,813,101 - -1.6
1,813,120 - +1.1
1,813,134 - +1.4
1,813,143 + +0.5
1,813,722 - 9127 mRNA_759 0.19 -1.5

Or see this region's nucleotide sequence