Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_770

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9137 and 9138 are separated by 352 nucleotides9138 and 9139 are separated by 409 nucleotides9139 and 9140 overlap by 13 nucleotides mRNA_769: 9137 - K08141 MAL MFS transporter, SP family, general alpha glucoside-H+ symporter, at 1,832,128 to 1,834,944 9137 mRNA_770: 9138 - K10765 ALKBH1 alkylated DNA repair protein alkB homolog 1, at 1,835,297 to 1,836,834 9138 mRNA_771: 9139 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,837,244 to 1,837,694 9139 mRNA_772: 9140 - Hypothetical Protein, at 1,837,682 to 1,837,975 9140

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,834,398 + 9137 mRNA_769 0.81 +0.3
1,834,704 + +0.3
1,834,794 + -0.0
1,834,988 - -0.2
1,835,187 + -0.7
1,835,187 + -0.9
1,835,419 + +0.6
1,835,567 + 9138 mRNA_770 0.18 -0.3
1,835,593 + 9138 mRNA_770 0.19 +0.9
1,835,847 + 9138 mRNA_770 0.36 +0.6
1,835,989 + 9138 mRNA_770 0.45 -3.2
1,836,000 - 9138 mRNA_770 0.46 -1.2
1,836,006 + 9138 mRNA_770 0.46 -0.6
1,836,104 - 9138 mRNA_770 0.52 +0.5
1,836,471 + 9138 mRNA_770 0.76 +1.5
1,836,877 - +1.1
1,836,900 - +0.3
1,837,037 - -0.2
1,837,612 - 9139 mRNA_771 0.82 -0.2

Or see this region's nucleotide sequence