Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_776

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9143 and 9144 are separated by 233 nucleotides mRNA_775: 9143 - Hypothetical Protein, at 1,842,252 to 1,843,593 9143 mRNA_776: 9144 - BLAST NADH-ubiquinone oxidoreductase kD subunit [Pseudo..., at 1,843,827 to 1,844,410 9144

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,843,207 + 9143 mRNA_775 0.71 +3.5
1,843,246 - 9143 mRNA_775 0.74 -1.5
1,843,385 + 9143 mRNA_775 0.84 +1.3
1,843,407 + 9143 mRNA_775 0.86 -0.8
1,843,566 - +0.2
1,843,798 + -0.3
1,844,669 - -1.1
1,844,678 - -1.4
1,844,690 + -0.5
1,844,691 - -1.2
1,844,691 - -0.4
1,844,702 + -0.5
1,844,703 + -0.3
1,844,994 - -0.2
1,845,124 + +1.0
1,845,255 - +0.5

Or see this region's nucleotide sequence