Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_830

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9197 and 9198 are separated by 432 nucleotides9198 and 9199 are separated by 389 nucleotides mRNA_829: 9197 - HMMPfam-Spc7 kinetochore protein-PF08317,SMART-Spc7 kinetochore protein-SM00787, at 1,984,199 to 1,988,562 9197 mRNA_830: 9198 - K00413 CYC1, CYT1, petC ubiquinol-cytochrome c reductase cytochrome c1 subunit, at 1,988,995 to 1,990,549 9198 mRNA_831: 9199 - K12366 ELMO1, CED12 engulfment and cell motility protein 1, at 1,990,939 to 1,993,710 9199

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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1,988,635 - -1.5
1,988,638 + +0.3
1,988,644 - +1.5
1,988,650 - -0.4
1,988,935 + +0.9
1,988,936 + +1.4
1,988,945 - -0.7
1,988,949 - +0.3
1,988,953 - -0.5
1,990,580 - -0.2
1,990,889 + +0.5
1,991,000 - +0.2
1,991,179 - -0.5
1,991,346 + 9199 mRNA_831 0.15 -2.2
1,991,353 - 9199 mRNA_831 0.15 -0.6

Or see this region's nucleotide sequence