Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_853

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9220 and 9221 are separated by 308 nucleotides9221 and 9222 are separated by 75 nucleotides mRNA_852: 9220 - K01923 purC phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,042,732 to 2,043,876 9220 mRNA_853: 9221 - K13125 NOSIP nitric oxide synthase-interacting protein, at 2,044,185 to 2,045,369 9221 mRNA_854: 9222 - K01620 ltaE threonine aldolase, at 2,045,445 to 2,046,969 9222

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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2,044,018 + +0.1
2,044,128 + -2.2
2,044,138 - -2.9
2,044,288 + +0.0
2,044,420 + 9221 mRNA_853 0.20 +0.8
2,044,866 + 9221 mRNA_853 0.57 +1.8
2,044,874 + 9221 mRNA_853 0.58 +0.4
2,045,028 - 9221 mRNA_853 0.71 +0.0
2,045,029 + 9221 mRNA_853 0.71 +0.6
2,045,109 + 9221 mRNA_853 0.78 -1.3
2,045,153 + 9221 mRNA_853 0.82 -3.0
2,045,984 + 9222 mRNA_854 0.35 +0.3
2,046,038 + 9222 mRNA_854 0.39 +0.6
2,046,188 + 9222 mRNA_854 0.49 +0.4

Or see this region's nucleotide sequence