Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_873

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9240 and 9241 are separated by 284 nucleotides9241 and 9242 are separated by 329 nucleotides9242 and 9243 are separated by 25 nucleotides mRNA_872: 9240 - K01852 LSS, ERG7 lanosterol synthase, at 2,080,935 to 2,083,844 9240 mRNA_873: 9241 - K17497 PMM phosphomannomutase, at 2,084,129 to 2,085,860 9241 mRNA_874: 9242 - BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255], at 2,086,190 to 2,086,635 9242 mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2,086,661 to 2,088,947 9243

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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2,083,893 + -0.1
2,084,010 - +2.9
2,084,034 + +0.1
2,084,076 + +3.0
2,084,084 + +1.2
2,084,087 + -2.4
2,086,139 - -1.4
2,086,281 + 9242 mRNA_874 0.20 +0.8
2,086,390 - 9242 mRNA_874 0.45 +2.0
2,086,699 - +0.2
2,086,708 + +0.1
2,086,711 - -0.3
2,086,717 + +0.4
2,086,727 + +0.3
2,086,729 + +2.5
2,086,735 - +0.5
2,086,744 - -0.6

Or see this region's nucleotide sequence