Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_890

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9257 and 9258 are separated by 120 nucleotides9258 and 9259 are separated by 327 nucleotides mRNA_889: 9257 - HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 2,126,028 to 2,126,699 9257 mRNA_890: 9258 - HMMPfam-Double-stranded RNA binding motif-PF00035,HMMPfam-Ribonuclease-III-like-PF14622,ProSiteProfiles-Double stranded RNA-binding domain (dsRBD) profile.-PS50137,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Double-stranded RNA binding motif-SM00358,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF54768,SUPERFAMILY--SSF69065, at 2,126,820 to 2,127,805 9258 mRNA_891: 9259 - K01405 PRD1 saccharolysin, at 2,128,133 to 2,130,693 9259

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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2,126,379 + 9257 mRNA_889 0.52 -0.6
2,126,381 + 9257 mRNA_889 0.53 -0.3
2,126,541 + 9257 mRNA_889 0.76 +0.1
2,126,624 - 9257 mRNA_889 0.89 +0.0
2,126,969 - 9258 mRNA_890 0.15 +0.7
2,127,115 - 9258 mRNA_890 0.30 +0.2
2,127,383 + 9258 mRNA_890 0.57 -1.1
2,127,428 + 9258 mRNA_890 0.62 +0.7
2,127,555 - 9258 mRNA_890 0.75 -0.1
2,127,740 + -0.3
2,127,771 - -0.8
2,127,899 + +0.8
2,128,280 + -0.3
2,128,317 + -0.5
2,128,403 - 9259 mRNA_891 0.11 +0.5
2,128,602 - 9259 mRNA_891 0.18 -1.0

Or see this region's nucleotide sequence