Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_939

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9307 and 9308 are separated by 233 nucleotides mRNA_939: 9307 - Hypothetical Protein, at 23,746 to 25,185 9307 mRNA_940: 9308 - Hypothetical Protein, at 25,419 to 26,964 9308

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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22,914 - +0.6
22,920 - -0.2
22,925 + -0.6
22,928 + +0.7
22,947 - -0.1
23,066 + +0.4
23,068 + +0.8
23,157 + +1.2
23,189 - +1.2
23,215 - +2.0
23,216 + -2.1
23,216 + -1.7
23,373 + +0.4
23,374 - -0.1
23,379 - +0.6
23,385 + -0.4
23,406 + -0.0
23,475 - +0.8
23,482 + +0.6
23,528 - +0.0
23,534 + +0.1
23,647 + +1.4
23,753 + -0.7
23,774 - +0.2
23,963 - 9307 mRNA_939 0.15 -1.2
23,985 - 9307 mRNA_939 0.17 -0.2
24,006 - 9307 mRNA_939 0.18 +1.3
24,048 + 9307 mRNA_939 0.21 -0.9
24,054 + 9307 mRNA_939 0.21 +0.2
24,106 + 9307 mRNA_939 0.25 -0.1
24,151 - 9307 mRNA_939 0.28 +1.6
24,218 + 9307 mRNA_939 0.33 +1.7
24,394 + 9307 mRNA_939 0.45 +0.0
24,408 - 9307 mRNA_939 0.46 +0.1
24,487 + 9307 mRNA_939 0.51 +0.5
24,538 - 9307 mRNA_939 0.55 -1.7
24,633 + 9307 mRNA_939 0.62 -1.2
24,682 - 9307 mRNA_939 0.65 -0.2
24,763 + 9307 mRNA_939 0.71 +0.4
24,807 + 9307 mRNA_939 0.74 +1.3
24,928 + 9307 mRNA_939 0.82 -0.6
24,976 - 9307 mRNA_939 0.85 +0.7
25,080 - +1.5
25,109 - +1.5
25,206 + -1.6
25,346 - -0.0
25,350 + -0.6
25,432 + +1.6
25,445 + -1.0
25,484 - -0.5
25,486 - +0.3
25,492 + -0.1
25,673 - 9308 mRNA_940 0.16 +2.8
25,673 - 9308 mRNA_940 0.16 +0.4
25,709 - 9308 mRNA_940 0.19 +0.8
25,836 + 9308 mRNA_940 0.27 -1.7
25,839 - 9308 mRNA_940 0.27 -1.8
25,876 - 9308 mRNA_940 0.30 +0.7
26,089 - 9308 mRNA_940 0.43 -0.2
26,104 + 9308 mRNA_940 0.44 +0.5
26,116 + 9308 mRNA_940 0.45 +0.4

Or see this region's nucleotide sequence