Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1021

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9388 and 9389 are separated by 453 nucleotides9389 and 9390 are separated by 492 nucleotides mRNA_1020: 9388 - K01527 EGD1, BTF3 nascent polypeptide-associated complex subunit beta, at 222,142 to 223,175 9388 mRNA_1021: 9389 - KOG3457 Sec61 protein translocation complex, beta subunit, at 223,629 to 224,377 9389 mRNA_1022: 9390 - KOG1550 Extracellular protein SEL-1 and related proteins, at 224,870 to 227,887 9390

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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222,823 + 9388 mRNA_1020 0.66 +0.4
222,830 + 9388 mRNA_1020 0.67 +0.1
223,000 - 9388 mRNA_1020 0.83 -0.2
223,294 - -2.6
223,452 + -2.0
223,574 + +1.9
224,301 + 9389 mRNA_1021 0.90 -0.2
224,562 - -0.0
224,590 - +0.2
224,611 + -0.1
224,632 + +0.1
224,710 - +0.0
224,750 + +1.8
224,752 - +0.2
224,770 + -0.5
224,778 + -0.3
224,901 + -0.0
224,905 - -0.2
224,908 + -2.1
224,920 + -0.8
224,924 + +1.2
224,925 + -3.0
225,053 + -1.9
225,192 + 9390 mRNA_1022 0.11 -0.7
225,302 - 9390 mRNA_1022 0.14 -0.2
225,341 + 9390 mRNA_1022 0.16 -2.7

Or see this region's nucleotide sequence