Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1035

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9402 and 9403 are separated by 411 nucleotides9403 and 9404 are separated by 152 nucleotides mRNA_1034: 9402 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 249,444 to 250,770 9402 mRNA_1035: 9403 - Hypothetical Protein, at 251,182 to 253,017 9403 mRNA_1036: 9404 - K12590 RRP46, EXOSC5 exosome complex component RRP46, at 253,170 to 254,250 9404

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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250,187 - 9402 mRNA_1034 0.56 -0.5
250,244 + 9402 mRNA_1034 0.60 -0.0
250,421 - 9402 mRNA_1034 0.74 -0.8
250,809 + +0.3
250,821 + +0.6
250,979 + +0.4
251,125 - -0.9
251,126 - +0.4
251,258 + -0.5
251,265 - +0.7
251,298 + -0.9
251,386 - 9403 mRNA_1035 0.11 -0.5
251,429 + 9403 mRNA_1035 0.13 -1.8
251,551 + 9403 mRNA_1035 0.20 +0.0
251,552 + 9403 mRNA_1035 0.20 -0.8
251,700 - 9403 mRNA_1035 0.28 +0.2
251,898 + 9403 mRNA_1035 0.39 +1.8
252,410 + 9403 mRNA_1035 0.67 +1.1
253,029 + +0.3
253,151 + -1.9
253,269 - +0.9

Or see this region's nucleotide sequence