Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1082

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9449 and 9450 are separated by 493 nucleotides9450 and 9451 are separated by 559 nucleotides mRNA_1081: 9449 - Hypothetical Protein, at 366,708 to 367,893 9449 mRNA_1082: 9450 - Hypothetical Protein, at 368,387 to 368,641 9450 mRNA_1083: 9451 - Hypothetical Protein, at 369,201 to 370,313 9451

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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367,478 + 9449 mRNA_1081 0.65 -0.0
367,829 - -0.8
368,006 - -0.1
368,012 - +0.4
368,013 + +0.0
368,160 + +0.1
368,183 + -1.0
368,302 - +1.1
368,310 - +0.1
368,331 + +0.4
368,438 - 9450 mRNA_1082 0.20 -0.9
368,439 - 9450 mRNA_1082 0.20 -0.0
368,472 - 9450 mRNA_1082 0.33 +1.1
368,473 - 9450 mRNA_1082 0.34 +0.5
368,505 - 9450 mRNA_1082 0.46 -0.5
368,568 + 9450 mRNA_1082 0.71 +0.2
368,581 - 9450 mRNA_1082 0.76 +0.0
368,608 - 9450 mRNA_1082 0.87 +0.8
368,611 - 9450 mRNA_1082 0.88 +1.0
368,613 + 9450 mRNA_1082 0.89 +1.0
368,649 + +1.6
368,770 + +1.0
368,771 + +0.6
369,221 - +1.6
369,237 + +0.3
369,341 - 9451 mRNA_1083 0.13 +0.4

Or see this region's nucleotide sequence