Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1093

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9460 and 9461 are separated by 70 nucleotides mRNA_1092: 9460 - SUPERFAMILY--SSF52833, at 388,491 to 389,761 9460 mRNA_1093: 9461 - K08734 MLH1 DNA mismatch repair protein MLH1, at 389,832 to 392,680 9461

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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388,880 - 9460 mRNA_1092 0.31 +2.4
388,904 + 9460 mRNA_1092 0.32 -0.2
388,931 - 9460 mRNA_1092 0.35 +0.1
389,031 - 9460 mRNA_1092 0.42 -2.3
389,094 - 9460 mRNA_1092 0.47 -0.5
389,183 - 9460 mRNA_1092 0.54 -0.5
389,218 + 9460 mRNA_1092 0.57 +3.0
389,218 + 9460 mRNA_1092 0.57 -1.6
389,242 - 9460 mRNA_1092 0.59 -0.2
389,295 - 9460 mRNA_1092 0.63 -0.1
389,333 - 9460 mRNA_1092 0.66 -0.4
389,897 - +0.1
390,079 + +0.1
390,215 - 9461 mRNA_1093 0.13 -0.5
390,324 - 9461 mRNA_1093 0.17 +1.0
390,344 + 9461 mRNA_1093 0.18 +0.1
390,548 - 9461 mRNA_1093 0.25 -1.7
390,621 - 9461 mRNA_1093 0.28 +0.0
390,624 - 9461 mRNA_1093 0.28 -0.0
390,648 + 9461 mRNA_1093 0.29 +0.9
390,930 - 9461 mRNA_1093 0.39 -0.3
390,991 + 9461 mRNA_1093 0.41 +0.3
391,214 + 9461 mRNA_1093 0.49 -1.5
391,350 + 9461 mRNA_1093 0.53 +1.0
391,515 + 9461 mRNA_1093 0.59 +0.8
391,793 + 9461 mRNA_1093 0.69 +1.1
391,949 + 9461 mRNA_1093 0.74 +0.1
391,961 + 9461 mRNA_1093 0.75 +0.9
392,074 - 9461 mRNA_1093 0.79 -0.3
392,114 + 9461 mRNA_1093 0.80 -1.5
392,241 - 9461 mRNA_1093 0.85 -0.4
392,335 + 9461 mRNA_1093 0.88 +0.5
392,385 - 9461 mRNA_1093 0.90 -1.4
392,407 - -0.2
392,544 - -1.4
392,553 + -0.4
392,847 + -0.9
392,873 + +0.8
392,898 - -0.1
393,027 - -0.5
393,121 + +0.3
393,143 - -1.5
393,145 - +0.2
393,149 - -0.7
393,182 - -0.3
393,271 - +0.2
393,292 + +0.4
393,297 - +1.0
393,302 - -2.2
393,303 + +1.0
393,307 + -0.4
393,335 + +0.5
393,440 + +0.5
393,443 + +0.8
393,447 + +0.5
393,461 + +1.3
393,543 - +2.3
393,549 - +0.1
393,552 + +0.3
393,577 + -0.2
393,578 + -0.3
393,579 - -0.5
393,589 - -0.3
393,597 + +0.2
393,612 - +0.1
393,618 + +1.1
393,622 + -0.9

Or see this region's nucleotide sequence