Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1117

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9484 and 9485 are separated by 132 nucleotides9485 and 9486 are separated by 456 nucleotides mRNA_1116: 9484 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 441,335 to 443,528 9484 mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443,661 to 444,962 9485 mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445,419 to 446,946 9486

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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442,808 + 9484 mRNA_1116 0.67 +1.0
442,844 - 9484 mRNA_1116 0.69 +0.8
442,859 + 9484 mRNA_1116 0.69 -0.4
443,179 + 9484 mRNA_1116 0.84 +0.8
443,282 - 9484 mRNA_1116 0.89 +0.3
443,442 + +1.0
443,565 - +1.7
443,576 - -1.5
444,967 + -1.4
444,971 - -1.8
445,170 - +0.1
445,175 - -1.3
445,307 - +0.6
445,457 + -0.2

Or see this region's nucleotide sequence