Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1125

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9492 and 9493 are separated by 325 nucleotides9493 and 9494 are separated by 346 nucleotides mRNA_1124: 9492 - K09613 COPS5, CSN5 COP9 signalosome complex subunit 5, at 458,374 to 459,990 9492 mRNA_1125: 9493 - K20465 OSBPL9_10_11, ORP9_10_11 oxysterol-binding protein-related protein 9/10/11, at 460,316 to 462,771 9493 mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463,118 to 466,210 9494

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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459,403 + 9492 mRNA_1124 0.64 -0.8
459,958 - +0.7
459,988 - +0.1
460,185 - +0.7
460,255 + -2.2
460,419 - -2.1
460,556 - -1.2
461,435 + 9493 mRNA_1125 0.46 +0.3
461,593 + 9493 mRNA_1125 0.52 -1.5
462,019 - 9493 mRNA_1125 0.69 +0.1
462,296 + 9493 mRNA_1125 0.81 -1.0
462,310 - 9493 mRNA_1125 0.81 +1.1
462,313 + 9493 mRNA_1125 0.81 +0.4
462,422 + 9493 mRNA_1125 0.86 -1.4
462,428 + 9493 mRNA_1125 0.86 +0.2
462,444 + 9493 mRNA_1125 0.87 -0.2
462,574 + +0.6
462,741 + +0.6
462,902 + -1.4
462,906 + +0.5
463,049 - +0.4
463,138 + +0.1
463,281 - -1.5
463,290 + +0.9
463,343 - +0.6
463,723 + 9494 mRNA_1126 0.20 +2.6

Or see this region's nucleotide sequence