Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1131

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9498 and 9499 are separated by 298 nucleotides9499 and 9500 are separated by 368 nucleotides mRNA_1130: 9498 - KOG1773 Stress responsive protein, at 479,991 to 480,650 9498 mRNA_1131: 9499 - K01758 CTH cystathionine gamma-lyase, at 480,949 to 482,653 9499 mRNA_1132: 9500 - K20362 YIF1 protein transport protein YIF1, at 483,022 to 484,511 9500

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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479,979 - +2.5
480,237 - 9498 mRNA_1130 0.37 -0.6
480,607 - -1.7
480,679 - +1.8
480,707 - -1.8
480,711 + -0.6
480,715 + +1.0
480,734 - -2.9
480,921 - -0.4
481,754 - 9499 mRNA_1131 0.47 -1.9
481,754 + 9499 mRNA_1131 0.47 -1.6
481,865 - 9499 mRNA_1131 0.54 -0.0
481,879 - 9499 mRNA_1131 0.55 +1.4
482,068 + 9499 mRNA_1131 0.66 +0.4
482,078 + 9499 mRNA_1131 0.66 -0.7
482,296 - 9499 mRNA_1131 0.79 -1.6
482,328 + 9499 mRNA_1131 0.81 -0.1
482,446 - 9499 mRNA_1131 0.88 -0.8
482,482 + 9499 mRNA_1131 0.90 +0.4
482,606 - -0.2
482,615 + -0.5
482,628 - -0.6
482,739 - +0.2
482,746 + +0.6
482,764 + +0.1
482,777 + +0.1
482,818 + -0.5
482,828 - -0.4

Or see this region's nucleotide sequence