Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1162

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9529 and 9530 are separated by 403 nucleotides9530 and 9531 are separated by 442 nucleotides mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543,983 to 547,395 9529 mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547,799 to 548,923 9530 mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549,366 to 551,873 9531

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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547,492 + +1.2
547,499 + +0.5
547,535 + +0.5
547,638 + +1.2
547,679 + +0.9
547,791 - -2.3
547,935 + 9530 mRNA_1162 0.12 +0.5
548,130 - 9530 mRNA_1162 0.29 -1.8
548,353 + 9530 mRNA_1162 0.49 -0.5
548,640 - 9530 mRNA_1162 0.75 +0.5
548,649 + 9530 mRNA_1162 0.76 +2.5
548,931 + -1.0
548,953 - +0.2
548,960 + +0.0
548,977 + -0.2
549,107 - -0.9
549,116 - +1.7
549,130 + +2.9
549,132 + -1.3
549,245 + +0.9
549,273 + +0.6
549,276 - +0.6
549,295 + +1.3
549,445 + +0.4
549,548 + -0.9
549,581 - -1.5
549,737 + 9531 mRNA_1163 0.15 -0.1
549,737 + 9531 mRNA_1163 0.15 -0.3
549,855 + 9531 mRNA_1163 0.19 -0.0

Or see this region's nucleotide sequence