Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1171

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9538 and 9539 are separated by 120 nucleotides9539 and 9540 are separated by 372 nucleotides mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566,177 to 568,431 9538 mRNA_1171: 9539 - K07277 SAM50, TOB55, bamA outer membrane protein insertion porin family, at 568,552 to 570,961 9539 mRNA_1172: 9540 - KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases, at 571,334 to 573,898 9540

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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567,799 - 9538 mRNA_1170 0.72 +0.2
568,245 - -0.2
568,253 + -0.9
568,298 + -2.0
568,565 + +0.8
571,045 + +0.7
571,064 - -2.1
571,131 - +2.1
571,134 + -0.3
571,164 - -0.3
571,168 - -0.5
571,170 + -0.4
571,174 + +1.3
571,202 - -0.0
571,311 + +2.3
571,322 - +0.9
571,621 + 9540 mRNA_1172 0.11 +1.0
571,646 + 9540 mRNA_1172 0.12 -4.5
571,931 - 9540 mRNA_1172 0.23 -0.3
571,932 + 9540 mRNA_1172 0.23 -0.5
571,934 - 9540 mRNA_1172 0.23 +1.7

Or see this region's nucleotide sequence