Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1196

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9563 and 9564 are separated by 792 nucleotides mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624,077 to 625,434 9563 mRNA_1196: 9564 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 626,227 to 627,477 9564

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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625,859 + -0.1
625,874 - -0.5
625,994 + -0.4
626,006 - +0.4
626,007 - -0.4
626,008 + -0.7
626,015 + +1.6
626,042 + -0.7
626,135 - +1.9
626,246 + +0.4
626,299 - -0.0
626,427 + 9564 mRNA_1196 0.16 -2.5
626,707 - 9564 mRNA_1196 0.38 -1.0
626,729 + 9564 mRNA_1196 0.40 +1.8
626,876 + 9564 mRNA_1196 0.52 +1.3
627,005 + 9564 mRNA_1196 0.62 -1.2
627,254 + 9564 mRNA_1196 0.82 -1.6
627,453 - -0.4
627,786 - -0.0
627,872 + +0.8
627,987 + -0.4
628,004 + -1.9
628,200 + +1.8
628,266 + +0.1
628,314 - -1.1
628,325 - -2.4
628,326 + -0.9
628,328 - +0.6
628,332 - +0.9
628,344 - -0.3
628,432 - -0.8
628,448 - -2.2

Or see this region's nucleotide sequence