Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1200

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9567 and 9568 are separated by 212 nucleotides9568 and 9569 are separated by 201 nucleotides mRNA_1199: 9567 - K02325 POLE2 DNA polymerase epsilon subunit 2, at 634,120 to 636,519 9567 mRNA_1200: 9568 - KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1), at 636,732 to 638,216 9568 mRNA_1201: 9569 - K12625 LSM6 U6 snRNA-associated Sm-like protein LSm6, at 638,418 to 638,898 9569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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636,668 - +1.3
636,680 - +2.0
636,955 + 9568 mRNA_1200 0.15 +1.2
637,313 - 9568 mRNA_1200 0.39 -0.9
637,341 - 9568 mRNA_1200 0.41 +0.2
637,499 - 9568 mRNA_1200 0.52 +1.6
637,668 - 9568 mRNA_1200 0.63 -0.4
637,693 + 9568 mRNA_1200 0.65 -0.7
637,696 - 9568 mRNA_1200 0.65 +0.1
638,006 - 9568 mRNA_1200 0.86 -0.7
638,166 + +0.6
638,193 - +0.3
639,063 - +0.7

Or see this region's nucleotide sequence