Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1212

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9579 and 9580 are separated by 640 nucleotides9580 and 9581 are separated by 396 nucleotides mRNA_1211: 9579 - K15078 SLX1 structure-specific endonuclease subunit SLX1, at 660,116 to 662,467 9579 mRNA_1212: 9580 - HMMPfam-Regulator of G protein signaling domain-PF00615,ProSiteProfiles-RGS domain profile.-PS50132,SMART-Regulator of G protein signalling domain-SM00315,SUPERFAMILY--SSF48097, at 663,108 to 664,692 9580 mRNA_1213: 9581 - KOG1205 Predicted dehydrogenase, at 665,089 to 665,972 9581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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662,460 + +1.1
662,572 + +1.1
662,685 - -0.9
662,687 - -1.9
662,843 - +0.0
665,442 - 9581 mRNA_1213 0.40 -0.5
665,448 + 9581 mRNA_1213 0.41 +0.6

Or see this region's nucleotide sequence