Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1253

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9620 and 9621 are separated by 399 nucleotides9621 and 9622 are separated by 715 nucleotides mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757,595 to 759,040 9620 mRNA_1253: 9621 - K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2, at 759,440 to 760,414 9621 mRNA_1254: 9622 - K02150 ATPeV1E, ATP6E V-type H+-transporting ATPase subunit E, at 761,130 to 762,354 9622

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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758,495 - 9620 mRNA_1252 0.62 -0.0
758,536 + 9620 mRNA_1252 0.65 -0.3
758,673 + 9620 mRNA_1252 0.75 +0.6
758,800 + 9620 mRNA_1252 0.83 -1.2
758,820 - 9620 mRNA_1252 0.85 +0.4
758,971 + -4.1
759,249 - -0.8
759,266 + +1.0
759,273 - +0.2
759,302 - +0.4
759,303 + +0.0
759,303 + +0.2
759,416 - +1.1
759,562 - 9621 mRNA_1253 0.13 -0.5
759,567 + 9621 mRNA_1253 0.13 +1.9
759,653 - 9621 mRNA_1253 0.22 +1.3
759,842 + 9621 mRNA_1253 0.41 -0.3
760,233 + 9621 mRNA_1253 0.81 -1.1
760,402 + +0.2
760,405 - -0.9
760,550 + +0.2
760,557 - -1.8
760,688 - -0.7

Or see this region's nucleotide sequence