Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1262

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9629 and 9630 are separated by 254 nucleotides9630 and 9631 are separated by 166 nucleotides mRNA_1261: 9629 - K04712 DEGS sphingolipid Delta-4 desaturase, at 778,890 to 780,707 9629 mRNA_1262: 9630 - KOG4781 Uncharacterized conserved protein, at 780,962 to 782,100 9630 mRNA_1263: 9631 - K06130 LYPLA2 lysophospholipase II, at 782,267 to 783,226 9631

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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780,112 - 9629 mRNA_1261 0.67 -0.8
780,729 - +1.1
780,848 + +1.0
781,567 - 9630 mRNA_1262 0.53 +0.4
781,776 + 9630 mRNA_1262 0.71 -0.8
781,992 - -0.5
782,011 + +1.9
782,019 + -1.2
782,057 + -0.7
782,108 + +0.5
782,129 - +0.8
782,141 - +0.3
782,148 - -0.0
782,152 - +0.9
782,156 + -0.3
782,156 - -0.3
782,158 + +1.3
782,158 + +0.1
782,170 + +0.4
782,181 - -0.2
782,227 + -1.4
782,265 - +0.5
782,344 - +0.7
782,354 - -2.0
782,909 + 9631 mRNA_1263 0.67 -1.7
783,049 - 9631 mRNA_1263 0.81 +1.7
783,085 - 9631 mRNA_1263 0.85 +0.3
783,098 + 9631 mRNA_1263 0.87 +0.4

Or see this region's nucleotide sequence