Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1318

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9686 and 9687 are separated by 539 nucleotides mRNA_1318: 9686 - KOG1773 Stress responsive protein, at 917,910 to 918,381 9686 mRNA_1319: 9687 - KOG0404 Thioredoxin reductase, at 918,921 to 919,455 9687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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917,040 - +1.1
917,064 + +1.5
917,183 - -1.4
917,184 + +0.6
917,202 + +0.5
917,229 - +1.0
917,356 + +0.2
917,361 - -0.7
917,510 + -0.3
917,512 - +0.2
917,513 + -1.4
917,515 - -0.2
917,516 + +0.6
917,516 + +0.4
917,523 - -2.6
917,672 + +1.7
917,677 + +0.1
918,382 - -0.2
918,522 - -0.8
918,531 + +1.4

Or see this region's nucleotide sequence