Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9699 and 9700 are separated by 562 nucleotides mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15,782 to 19,108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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15,354 - -0.5
15,355 - +0.7
15,359 + +0.6
15,512 - -0.1
15,519 + +2.2
15,580 + +1.5
15,637 + -0.1
15,648 + +0.2
15,654 - +0.1
15,656 - -1.2
15,657 + -0.7
15,663 - +0.9
15,665 - +0.0
15,665 + -1.9
15,667 + -0.9
15,671 + -1.3
15,683 + -0.1
15,684 + +0.0
15,699 + +1.7
15,713 + -0.2
15,792 - +0.3
15,857 + +1.3
15,996 - +0.7
16,078 + -2.1
16,087 - -1.7
16,089 + -0.6
16,122 + 9700 mRNA_1332 0.10 +0.5
16,280 - 9700 mRNA_1332 0.15 -0.8
16,363 - 9700 mRNA_1332 0.17 -0.8
16,505 - 9700 mRNA_1332 0.22 -0.1
16,505 - 9700 mRNA_1332 0.22 -2.1
16,546 + 9700 mRNA_1332 0.23 -0.8
16,581 + 9700 mRNA_1332 0.24 -0.2
16,581 + 9700 mRNA_1332 0.24 +0.2
16,899 + 9700 mRNA_1332 0.34 -0.2
16,980 - 9700 mRNA_1332 0.36 -0.8
17,024 - 9700 mRNA_1332 0.37 +1.1
17,288 - 9700 mRNA_1332 0.45 +0.2
17,370 - 9700 mRNA_1332 0.48 -0.2
17,548 + 9700 mRNA_1332 0.53 -0.1
17,574 - 9700 mRNA_1332 0.54 -0.8
17,841 - 9700 mRNA_1332 0.62 -0.9
17,865 + 9700 mRNA_1332 0.63 -0.1
17,957 + 9700 mRNA_1332 0.65 +0.1
18,002 + 9700 mRNA_1332 0.67 +0.5
18,511 - 9700 mRNA_1332 0.82 -0.8
18,550 - 9700 mRNA_1332 0.83 -1.7
18,573 + 9700 mRNA_1332 0.84 -1.9
18,882 - +1.2
19,111 - +0.2
19,235 - -0.8
19,262 - +0.1
19,291 + +0.1
19,296 - +0.5
19,304 - +0.2
19,406 - +0.4
19,412 - +0.4
19,414 - +1.2
19,420 - +0.6
19,422 + -0.2
19,434 - -1.8
19,442 + -0.4
19,452 + +1.2
19,456 - +0.2
19,461 - +0.4
19,480 - +0.6
19,494 + -1.5
19,495 - +0.0
19,496 + -0.4
19,596 - -0.3
19,625 + +0.4
19,626 + +0.8
19,708 - +0.6
19,769 - +1.7
19,769 - +1.3
19,856 + -0.4
19,859 + -0.4
19,899 - +0.1

Or see this region's nucleotide sequence