Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1336

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9703 and 9704 are separated by 310 nucleotides9704 and 9705 are separated by 99 nucleotides mRNA_1335: 9703 - HMMPfam-Cysteine-rich TM module stress tolerance-PF12734, at 26,595 to 27,216 9703 mRNA_1336: 9704 - K01850 E5.4.99.5 chorismate mutase, at 27,527 to 28,944 9704 mRNA_1337: 9705 - K17732 PMPCB, MAS1 mitochondrial-processing peptidase subunit beta, at 29,044 to 31,153 9705

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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26,539 - -1.1
26,663 - 9703 mRNA_1335 0.11 +0.4
26,816 + 9703 mRNA_1335 0.36 +0.2
26,822 + 9703 mRNA_1335 0.36 +0.3
27,073 + 9703 mRNA_1335 0.77 -0.3
27,389 - +0.8
27,408 + +0.1
27,522 - -1.3
28,983 - -0.1
28,998 - -0.5
29,011 - +1.1
29,034 - -2.0

Or see this region's nucleotide sequence