Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1373

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9740 and 9741 are separated by 414 nucleotides mRNA_1372: 9740 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 115,782 to 116,339 9740 mRNA_1373: 9741 - K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6, at 116,754 to 120,065 9741

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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115,843 - 9740 mRNA_1372 0.11 +0.4
116,036 + 9740 mRNA_1372 0.46 +1.5
116,187 + 9740 mRNA_1372 0.73 +0.6
116,267 + 9740 mRNA_1372 0.87 -0.3
116,419 - +0.7
116,420 + -1.5
116,576 + +0.1
116,604 - -1.9
116,731 + -0.6
116,876 - +0.2
117,019 - +1.9
117,055 - +0.2
117,188 + 9741 mRNA_1373 0.13 +0.9
117,208 + 9741 mRNA_1373 0.14 -2.1
117,684 + 9741 mRNA_1373 0.28 +0.9
117,758 - 9741 mRNA_1373 0.30 -0.3
117,798 - 9741 mRNA_1373 0.32 +0.4
117,814 + 9741 mRNA_1373 0.32 -1.4
117,903 - 9741 mRNA_1373 0.35 -0.0
117,923 - 9741 mRNA_1373 0.35 +0.1
118,033 + 9741 mRNA_1373 0.39 +0.3
118,486 - 9741 mRNA_1373 0.52 +0.4
118,488 - 9741 mRNA_1373 0.52 -0.5
118,607 - 9741 mRNA_1373 0.56 +1.2
118,913 + 9741 mRNA_1373 0.65 +0.1
118,933 + 9741 mRNA_1373 0.66 -3.2
119,028 - 9741 mRNA_1373 0.69 -0.8
119,048 - 9741 mRNA_1373 0.69 +0.6
119,055 + 9741 mRNA_1373 0.69 +0.4
119,058 - 9741 mRNA_1373 0.70 +0.9
119,157 + 9741 mRNA_1373 0.73 -1.3
119,201 + 9741 mRNA_1373 0.74 +1.5
119,326 + 9741 mRNA_1373 0.78 +0.5
119,509 - 9741 mRNA_1373 0.83 +0.3
119,520 + 9741 mRNA_1373 0.84 +0.6
119,824 + -1.3
120,063 - +0.6
120,077 + +0.9
120,092 + -0.2
120,095 - -0.9
120,098 + +0.5
120,099 - +0.7
120,101 + +0.1
120,202 - +0.3
120,206 + +0.2
120,214 - +1.2
120,255 - +0.3
120,679 + +1.4
120,695 - -0.0
120,705 + +0.6
120,819 - -1.4
120,826 + -1.0
120,920 - +0.1
120,937 - +0.5
120,970 + +1.4
120,971 - +0.8
120,985 + -0.7
120,987 - +0.4
120,993 + +0.1
121,024 + +1.3

Or see this region's nucleotide sequence