Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1378

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9745 and 9746 are separated by 410 nucleotides9746 and 9747 are separated by 112 nucleotides mRNA_1377: 9745 - Hypothetical Protein, at 129,264 to 129,958 9745 mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130,369 to 133,964 9746 mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134,077 to 136,225 9747

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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129,394 + 9745 mRNA_1377 0.19 +0.3
129,578 + 9745 mRNA_1377 0.45 -1.2
129,667 - 9745 mRNA_1377 0.58 +1.1
129,680 + 9745 mRNA_1377 0.60 -0.2
129,690 + 9745 mRNA_1377 0.61 +1.0
129,841 - 9745 mRNA_1377 0.83 -1.2
129,858 - 9745 mRNA_1377 0.85 -1.7
129,965 - +3.8
129,981 - +0.8
129,996 + +1.3
129,996 - +1.1
130,156 - +0.4
130,289 - -1.5
130,290 - +0.5
130,296 + +0.7
130,311 - +0.7
130,405 - -1.5
130,412 + +1.8
130,419 - -3.5
130,421 + -1.2
130,424 - -0.3
130,694 - +0.1
130,715 - -0.1
130,733 + 9746 mRNA_1378 0.10 +0.8
130,982 + 9746 mRNA_1378 0.17 +1.3
131,000 + 9746 mRNA_1378 0.18 +0.1
131,173 - 9746 mRNA_1378 0.22 +2.3
131,278 - 9746 mRNA_1378 0.25 +0.2
131,302 - 9746 mRNA_1378 0.26 +3.6
131,386 + 9746 mRNA_1378 0.28 +0.4
131,416 + 9746 mRNA_1378 0.29 +0.3
131,476 + 9746 mRNA_1378 0.31 -0.3
131,755 + 9746 mRNA_1378 0.39 -0.5
131,856 + 9746 mRNA_1378 0.41 -1.2
131,942 + 9746 mRNA_1378 0.44 +0.4
132,476 - 9746 mRNA_1378 0.59 +0.3
132,608 - 9746 mRNA_1378 0.62 +0.1
132,612 + 9746 mRNA_1378 0.62 +0.3
132,629 + 9746 mRNA_1378 0.63 -0.7
132,634 - 9746 mRNA_1378 0.63 +1.0
132,650 + 9746 mRNA_1378 0.63 -0.5
132,782 - 9746 mRNA_1378 0.67 -0.6
132,946 + 9746 mRNA_1378 0.72 -0.0
133,060 + 9746 mRNA_1378 0.75 -1.1
133,099 - 9746 mRNA_1378 0.76 -0.4
133,105 + 9746 mRNA_1378 0.76 -1.0
133,317 + 9746 mRNA_1378 0.82 +0.6
133,441 - 9746 mRNA_1378 0.85 +0.4
133,507 + 9746 mRNA_1378 0.87 +2.1
133,625 - -0.3
133,696 - -0.2
134,093 - -0.4
134,259 + +1.3
134,368 - 9747 mRNA_1379 0.14 +0.8
134,416 + 9747 mRNA_1379 0.16 +0.7
134,476 + 9747 mRNA_1379 0.19 +0.6
134,567 + 9747 mRNA_1379 0.23 +2.2
134,764 - 9747 mRNA_1379 0.32 +0.9
134,768 - 9747 mRNA_1379 0.32 +0.4
134,774 - 9747 mRNA_1379 0.32 -1.3
134,879 - 9747 mRNA_1379 0.37 +2.7
134,946 + 9747 mRNA_1379 0.40 -0.0
134,947 - 9747 mRNA_1379 0.40 +0.1
134,962 + 9747 mRNA_1379 0.41 +0.5

Or see this region's nucleotide sequence