Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1393

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9760 and 9761 are separated by 152 nucleotides9761 and 9762 are separated by 12 nucleotides mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161,776 to 163,110 9760 mRNA_1393: 9761 - Hypothetical Protein, at 163,263 to 164,488 9761 mRNA_1394: 9762 - K04907 KCNH4 potassium voltage-gated channel Eag-related subfamily H member 4, at 164,501 to 165,028 9762

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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162,396 + 9760 mRNA_1392 0.46 +0.7
162,859 + 9760 mRNA_1392 0.81 -0.4
163,017 + -2.4
163,165 + -0.1
163,586 - 9761 mRNA_1393 0.26 -2.3
163,730 - 9761 mRNA_1393 0.38 -0.8
164,880 + 9762 mRNA_1394 0.72 +1.5
164,931 - 9762 mRNA_1394 0.81 -0.6
165,244 - +0.8
165,470 + -1.6

Or see this region's nucleotide sequence