Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1402

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9769 and 9770 are separated by 463 nucleotides9770 and 9771 are separated by 387 nucleotides mRNA_1401: 9769 - Hypothetical Protein, at 184,306 to 185,166 9769 mRNA_1402: 9770 - K06654 PHO80 phosphate system cyclin PHO80, at 185,630 to 187,322 9770 mRNA_1403: 9771 - K08190 SLC16A14 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 14, at 187,710 to 190,029 9771

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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185,488 + -1.0
185,591 - +1.1
185,900 + 9770 mRNA_1402 0.16 +1.2
185,935 - 9770 mRNA_1402 0.18 -0.4
187,331 - -0.7
187,353 + -1.1
187,503 - -0.1
187,509 + +0.1
187,643 - -1.2
187,645 - +0.6
187,653 + +0.9
187,797 - +2.2
187,943 + 9771 mRNA_1403 0.10 -0.6
187,979 - 9771 mRNA_1403 0.12 -0.2
188,086 + 9771 mRNA_1403 0.16 -0.9
188,217 + 9771 mRNA_1403 0.22 +0.6
188,239 + 9771 mRNA_1403 0.23 -0.0

Or see this region's nucleotide sequence