Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1404

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9771 and 9772 are separated by 770 nucleotides9772 and 9773 are separated by 534 nucleotides mRNA_1403: 9771 - K08190 SLC16A14 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 14, at 187,710 to 190,029 9771 mRNA_1404: 9772 - KOG2504 Monocarboxylate transporter, at 190,800 to 192,983 9772 mRNA_1405: 9773 - Hypothetical Protein, at 193,518 to 194,541 9773

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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189,982 + +0.7
190,004 + -0.2
190,019 + -0.3
190,164 - +0.3
190,322 - +0.0
190,451 - +0.4
190,465 + +0.7
190,478 + -0.0
190,566 - -0.5
190,567 - +0.3
190,609 + +0.1
190,709 - +0.7
190,784 + -0.7
190,923 - -0.7
191,047 + 9772 mRNA_1404 0.11 +1.8
192,226 + 9772 mRNA_1404 0.65 +1.3
192,227 + 9772 mRNA_1404 0.65 +0.7
192,228 - 9772 mRNA_1404 0.65 -0.3
192,228 - 9772 mRNA_1404 0.65 +0.3
192,570 - 9772 mRNA_1404 0.81 -0.3
192,668 - 9772 mRNA_1404 0.86 +0.5
192,670 + 9772 mRNA_1404 0.86 +0.2
192,685 + 9772 mRNA_1404 0.86 -1.5
192,811 + +0.8
192,943 - -0.1
192,950 + +0.8
192,962 - -3.3
192,962 - -0.2
192,966 + -0.8
193,096 + +1.2
193,099 + -0.4
193,100 + +0.5
193,100 + -1.0
193,101 + -0.6
193,108 + -0.2
193,122 + +0.6
193,123 + +0.8
193,123 + -0.6
193,132 - -1.7
193,263 - -1.0
193,419 + -0.9
193,554 - +0.2

Or see this region's nucleotide sequence