Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1410

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9777 and 9778 are separated by 133 nucleotides9778 and 9779 are separated by 992 nucleotides mRNA_1409: 9777 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 203,066 to 203,566 9777 mRNA_1410: 9778 - K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e, at 203,700 to 204,648 9778 mRNA_1411: 9779 - Hypothetical Protein, at 205,641 to 206,403 9779

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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203,220 + 9777 mRNA_1409 0.31 +0.5
203,285 + 9777 mRNA_1409 0.44 +0.7
203,366 - 9777 mRNA_1409 0.60 -0.2
203,374 - 9777 mRNA_1409 0.61 +2.2
203,384 - 9777 mRNA_1409 0.63 -0.4
203,414 + 9777 mRNA_1409 0.69 +0.0
203,508 + 9777 mRNA_1409 0.88 +2.0
204,723 + +1.1
204,733 + +0.5
204,859 - +1.1
204,982 - +0.0
205,004 - +0.1
205,177 - -0.4
205,287 - -2.1
205,433 - +0.9
205,575 + +0.5
205,576 - +2.0
205,578 - +0.5
205,584 + +1.1
205,599 - -0.7

Or see this region's nucleotide sequence