Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1420

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9787 and 9788 are separated by 593 nucleotides9788 and 9789 are separated by 868 nucleotides mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229,918 to 235,537 9787 mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236,131 to 238,616 9788 mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239,485 to 240,342 9789

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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235,180 + -0.6
235,459 + -0.2
235,570 - -0.0
235,729 + -0.2
235,736 - +0.6
235,741 + -0.8
236,036 + -0.8
236,051 + -0.3
236,053 - -0.1
236,322 - -1.7
236,522 - 9788 mRNA_1420 0.16 +1.2
236,825 + 9788 mRNA_1420 0.28 +0.1
236,942 + 9788 mRNA_1420 0.33 -0.7
237,319 + 9788 mRNA_1420 0.48 -0.6
237,366 + 9788 mRNA_1420 0.50 -1.4
237,501 + 9788 mRNA_1420 0.55 -0.6
237,504 - 9788 mRNA_1420 0.55 +0.7
237,520 + 9788 mRNA_1420 0.56 -1.0
237,768 - 9788 mRNA_1420 0.66 -0.6
238,237 - 9788 mRNA_1420 0.85 -0.1
238,332 + 9788 mRNA_1420 0.89 -0.6
238,630 + +1.4
238,779 + +0.4
238,902 - -0.8
238,908 - -0.9
238,921 - -0.9
239,066 - +0.1
239,073 + -1.7
239,084 - -0.9
239,209 - -0.7
239,214 - +1.9
239,233 + -0.5
239,358 + -0.4
239,427 - -1.5
239,429 - -0.6
239,458 + +0.4
239,469 + -1.3
239,503 + +0.2
239,535 + -1.6

Or see this region's nucleotide sequence