Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1424

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9791 and 9792 are separated by 299 nucleotides mRNA_1423: 9791 - Hypothetical Protein, at 245,191 to 249,551 9791 mRNA_1424: 9792 - HMMPfam-NUP50 (Nucleoporin 50 kDa)-PF08911, at 249,851 to 250,206 9792

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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249,486 - +0.6
249,502 - +1.5
249,678 + +0.4
249,795 - +0.8
249,795 - -0.6
249,795 - +0.3
249,818 + -1.1
249,850 - +0.5
249,946 - 9792 mRNA_1424 0.27 +0.6
250,102 - 9792 mRNA_1424 0.71 -1.2
250,404 - +0.3
251,100 + -0.1

Or see this region's nucleotide sequence