Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1445

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9812 and 9813 are separated by 138 nucleotides mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294,219 to 295,156 9812 mRNA_1445: 9813 - K20045 ITSN intersectin, at 295,295 to 301,799 9813

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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294,320 - 9812 mRNA_1444 0.11 -2.2
294,323 - 9812 mRNA_1444 0.11 +0.2
294,485 + 9812 mRNA_1444 0.28 -1.3
294,601 - 9812 mRNA_1444 0.41 -0.0
294,743 - 9812 mRNA_1444 0.56 -1.6
294,744 - 9812 mRNA_1444 0.56 -1.1
294,907 - 9812 mRNA_1444 0.73 -0.1
295,199 - -1.4
295,613 - -0.9
295,619 - +0.7
295,909 - +0.3
295,931 - +0.6
295,948 - 9813 mRNA_1445 0.10 +0.4
295,948 - 9813 mRNA_1445 0.10 +0.3
296,369 + 9813 mRNA_1445 0.17 -0.4
296,490 + 9813 mRNA_1445 0.18 +1.6
296,677 + 9813 mRNA_1445 0.21 +0.7
296,682 + 9813 mRNA_1445 0.21 +0.5
297,395 + 9813 mRNA_1445 0.32 +0.2
297,602 - 9813 mRNA_1445 0.35 -1.3
297,845 + 9813 mRNA_1445 0.39 -0.8
298,121 - 9813 mRNA_1445 0.43 +0.6
298,475 - 9813 mRNA_1445 0.49 +3.2
299,474 - 9813 mRNA_1445 0.64 -0.7
299,857 + 9813 mRNA_1445 0.70 -0.2
299,929 - 9813 mRNA_1445 0.71 -1.7
300,259 - 9813 mRNA_1445 0.76 -2.3
301,371 + -1.2
301,391 + -0.0
301,527 - -1.4
301,647 - +1.7
301,666 + +3.1
301,689 - -1.4
301,694 + +0.9
301,695 - +0.8
301,697 + -0.1
301,703 - -0.4
301,785 - -3.2
301,793 - -0.5
301,801 - +2.5
301,804 - +0.2
301,810 - +0.7
301,817 + +0.8
301,822 + -0.1
301,822 + +1.0
301,831 - +0.6
301,838 - -1.9
301,846 - -3.6
301,848 + +0.2
301,938 - -1.1
301,972 - -1.2
302,127 - +0.7
302,264 + +1.0
302,284 + -0.3
302,403 - +1.8
302,446 - +0.5
302,461 + +0.5
302,484 + +0.4
302,502 - -0.9
302,512 - +1.2
302,535 - +0.1
302,587 - -0.7
302,594 + -1.1
302,650 + -0.2
302,682 + -0.5
302,704 - -3.8
302,726 + -0.3
302,740 - -4.0
302,797 + +0.3

Or see this region's nucleotide sequence