Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1490

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9857 and 9858 are separated by 416 nucleotides mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428,243 to 429,095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429,512 to 431,122 9858

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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428,793 + 9857 mRNA_1489 0.64 +0.1
428,802 + 9857 mRNA_1489 0.66 -3.4
429,226 + +0.4
429,364 - -0.5
429,381 + +1.0
429,389 - -0.7
429,389 + -0.8
429,393 - -1.3
429,413 + +0.2
429,513 - -0.6
429,567 - +0.4
429,809 + 9858 mRNA_1490 0.18 -0.9
429,962 - 9858 mRNA_1490 0.28 +1.9
429,995 - 9858 mRNA_1490 0.30 -1.4
430,109 - 9858 mRNA_1490 0.37 -1.2
430,578 + 9858 mRNA_1490 0.66 +0.4
430,684 - 9858 mRNA_1490 0.73 -0.7
430,685 + 9858 mRNA_1490 0.73 -0.3
430,849 - 9858 mRNA_1490 0.83 -1.0
430,881 - 9858 mRNA_1490 0.85 -0.1
431,002 + +0.7
431,008 + +1.2
431,010 - +0.2
431,014 - +1.4
431,014 - -2.9
431,160 + -1.5
431,165 - -3.7
431,180 - -0.9
431,183 + +0.5
431,186 - -0.2
431,190 + +1.4
431,200 - +0.2
431,204 + +0.3
431,207 + -0.2
431,208 + -0.1
431,216 + +1.0
431,219 - +0.6
431,222 + -0.4
431,223 + +1.9
431,230 + +1.2
431,231 - +0.7
431,235 + -0.6
431,242 + +0.2
431,250 - +0.5
431,250 - -0.5
431,250 + +0.6
431,269 + +2.4
431,292 - -1.4
431,293 + +1.5
431,293 + -0.2
431,303 - -0.3
431,337 - -0.0
431,340 + +0.4
431,342 + +0.3
431,395 - -0.9
431,486 + -0.3
431,496 + -0.7
431,498 - -0.0
431,519 - -0.2
431,521 + -0.2
431,529 + -0.6
431,569 + +1.7
431,640 - +0.4
431,643 + +0.3
431,647 + -2.7
431,653 + +1.6
431,658 - -0.2
431,797 - +1.6
431,807 + -0.8
431,918 + -1.9
431,936 - +0.6
431,957 + -2.4
432,095 + -0.9

Or see this region's nucleotide sequence