Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1491

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9859 and 9860 are separated by 769 nucleotides mRNA_1491: 9859 - K04513 RHOA Ras homolog gene family, member A, at 432,599 to 433,571 9859 mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683 9860

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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431,640 - +0.4
431,643 + +0.3
431,647 + -2.7
431,653 + +1.6
431,658 - -0.2
431,797 - +1.6
431,807 + -0.8
431,918 + -1.9
431,936 - +0.6
431,957 + -2.4
432,095 + -0.9
432,215 + -0.0
432,251 + -1.9
432,260 + -2.4
432,265 + -2.1
432,382 + -1.1
432,416 + -3.3
432,720 + 9859 mRNA_1491 0.12 +0.4
433,836 - -0.6
433,866 - +1.7
433,874 - +0.1
433,895 + +1.5
433,924 - -0.9
434,004 - -3.2
434,015 + -2.8
434,140 - +0.7
434,286 + -0.5
434,298 + +1.1

Or see this region's nucleotide sequence