Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1510

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9877 and 9878 are separated by 757 nucleotides9878 and 9879 are separated by 91 nucleotides mRNA_1509: 9877 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 474,155 to 475,425 9877 mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476,183 to 478,334 9878 mRNA_1511: 9879 - KOG2136 Transcriptional regulators binding to the GC-rich sequences, at 478,426 to 481,591 9879

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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475,479 + -1.6
475,910 + -0.3
475,916 + -0.3
476,024 - -1.5
476,078 - +0.2
476,086 + -0.6
476,179 + +0.4
476,810 - 9878 mRNA_1510 0.29 -1.1
477,180 - 9878 mRNA_1510 0.46 +0.8
477,475 + 9878 mRNA_1510 0.60 +0.3
477,778 + 9878 mRNA_1510 0.74 -2.4
478,353 - +0.5

Or see this region's nucleotide sequence