Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1527

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9895 and 9896 are separated by 534 nucleotides mRNA_1527: 9895 - KOG3272 Predicted coiled-coil protein, at 515,504 to 516,509 9895 mRNA_1528: 9896 - K06030 MFN mitofusin, at 517,044 to 520,163 9896

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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514,528 - +0.5
514,543 - -1.4
514,667 + +1.1
514,698 + +0.6
514,780 - +0.7
514,813 - +1.7
514,989 - +1.8
515,117 + +0.4
515,383 - +0.9
515,542 - -0.4
515,706 - 9895 mRNA_1527 0.20 +0.6
516,572 + -0.0
516,723 + +0.5
516,861 + -0.2
516,909 - +1.1
517,001 - +0.9
517,010 - +0.5
517,027 - +0.8
517,140 + +1.2

Or see this region's nucleotide sequence