Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1561

Experiment: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9928 and 9929 are separated by 360 nucleotides9929 and 9930 are separated by 233 nucleotides mRNA_1560: 9928 - HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370, at 596,443 to 598,270 9928 mRNA_1561: 9929 - K01920 gshB, GSS glutathione synthase, at 598,631 to 600,413 9929 mRNA_1562: 9930 - K17770 TOM20 mitochondrial import receptor subunit TOM20, at 600,647 to 601,701 9930

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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598,006 - 9928 mRNA_1560 0.86 -0.7
598,006 - 9928 mRNA_1560 0.86 -0.5
598,146 + +0.5
598,308 - +1.3
598,425 - +0.5
598,439 + -0.6
598,441 + +0.2
598,563 - +0.5
598,586 + +0.0
598,589 - -0.2
598,592 + +0.4
598,624 + +0.9
600,509 - -0.4
600,514 - -1.0
600,640 - +1.1
600,655 + +0.5
600,744 + -0.6

Or see this region's nucleotide sequence